((=- Latex base template (must inherit)
This template builds upon the abstract template, adding common latex output
functions. Figures, data_text,
This template defines defines a default docclass, the inheriting class should
override this.-=))

((*- extends 'document_contents.tex.j2' -*))

%===============================================================================
% Abstract overrides
%===============================================================================

((*- block header -*))
    ((* block docclass *))\documentclass[11pt]{article}((* endblock docclass *))

    ((* block packages *))

    % Basic figure setup, for now with no caption control since it's done
    % automatically by Pandoc (which extracts ![](path) syntax from Markdown).
    \usepackage{graphicx}
    % Keep aspect ratio if custom image width or height is specified
    \setkeys{Gin}{keepaspectratio}
    % Maintain compatibility with old templates. Remove in nbconvert 6.0
    \let\Oldincludegraphics\includegraphics
    % Ensure that by default, figures have no caption (until we provide a
    % proper Figure object with a Caption API and a way to capture that
    % in the conversion process - todo).
    \usepackage{caption}
    \DeclareCaptionFormat{nocaption}{}
    \captionsetup{format=nocaption,aboveskip=0pt,belowskip=0pt}

    \usepackage{float}
    \floatplacement{figure}{H} % forces figures to be placed at the correct location
    \usepackage{xcolor} % Allow colors to be defined
    \usepackage{enumerate} % Needed for markdown enumerations to work
    \usepackage{geometry} % Used to adjust the document margins
    \usepackage{amsmath} % Equations
    \usepackage{amssymb} % Equations
    \usepackage{textcomp} % defines textquotesingle
    % Hack from http://tex.stackexchange.com/a/47451/13684:
    \AtBeginDocument{%
        \def\PYZsq{\textquotesingle}% Upright quotes in Pygmentized code
    }
    \usepackage{upquote} % Upright quotes for verbatim code
    \usepackage{eurosym} % defines \euro

    \usepackage{iftex}
    \ifPDFTeX
        \usepackage[T1]{fontenc}
        \IfFileExists{alphabeta.sty}{
              \usepackage{alphabeta}
          }{
              \usepackage[mathletters]{ucs}
              \usepackage[utf8x]{inputenc}
          }
    \else
        \usepackage{fontspec}
        \usepackage{unicode-math}
    \fi

    \usepackage{fancyvrb} % verbatim replacement that allows latex
    \usepackage{grffile} % extends the file name processing of package graphics
                         % to support a larger range
    \makeatletter % fix for old versions of grffile with XeLaTeX
    \@ifpackagelater{grffile}{2019/11/01}
    {
      % Do nothing on new versions
    }
    {
      \def\Gread@@xetex#1{%
        \IfFileExists{"\Gin@base".bb}%
        {\Gread@eps{\Gin@base.bb}}%
        {\Gread@@xetex@aux#1}%
      }
    }
    \makeatother
    \usepackage[Export]{adjustbox} % Used to constrain images to a maximum size
    \adjustboxset{max size={0.9\linewidth}{0.9\paperheight}}

    % The hyperref package gives us a pdf with properly built
    % internal navigation ('pdf bookmarks' for the table of contents,
    % internal cross-reference links, web links for URLs, etc.)
    \usepackage{hyperref}
    % The default LaTeX title has an obnoxious amount of whitespace. By default,
    % titling removes some of it. It also provides customization options.
    \usepackage{titling}
    \usepackage{longtable} % longtable support required by pandoc >1.10
    \usepackage{booktabs}  % table support for pandoc > 1.12.2
    \usepackage{array}     % table support for pandoc >= 2.11.3
    \usepackage{calc}      % table minipage width calculation for pandoc >= 2.11.1
    \usepackage[inline]{enumitem} % IRkernel/repr support (it uses the enumerate* environment)
    \usepackage[normalem]{ulem} % ulem is needed to support strikethroughs (\sout)
                                % normalem makes italics be italics, not underlines
    \usepackage{soul}      % strikethrough (\st) support for pandoc >= 3.0.0
    \usepackage{mathrsfs}
    ((* endblock packages *))

    ((* block definitions *))
    % Colors for the hyperref package
    \definecolor{urlcolor}{rgb}{0,.145,.698}
    \definecolor{linkcolor}{rgb}{.71,0.21,0.01}
    \definecolor{citecolor}{rgb}{.12,.54,.11}

    % ANSI colors
    \definecolor{ansi-black}{HTML}{3E424D}
    \definecolor{ansi-black-intense}{HTML}{282C36}
    \definecolor{ansi-red}{HTML}{E75C58}
    \definecolor{ansi-red-intense}{HTML}{B22B31}
    \definecolor{ansi-green}{HTML}{00A250}
    \definecolor{ansi-green-intense}{HTML}{007427}
    \definecolor{ansi-yellow}{HTML}{DDB62B}
    \definecolor{ansi-yellow-intense}{HTML}{B27D12}
    \definecolor{ansi-blue}{HTML}{208FFB}
    \definecolor{ansi-blue-intense}{HTML}{0065CA}
    \definecolor{ansi-magenta}{HTML}{D160C4}
    \definecolor{ansi-magenta-intense}{HTML}{A03196}
    \definecolor{ansi-cyan}{HTML}{60C6C8}
    \definecolor{ansi-cyan-intense}{HTML}{258F8F}
    \definecolor{ansi-white}{HTML}{C5C1B4}
    \definecolor{ansi-white-intense}{HTML}{A1A6B2}
    \definecolor{ansi-default-inverse-fg}{HTML}{FFFFFF}
    \definecolor{ansi-default-inverse-bg}{HTML}{000000}

    % common color for the border for error outputs.
    \definecolor{outerrorbackground}{HTML}{FFDFDF}

    % commands and environments needed by pandoc snippets
    % extracted from the output of `pandoc -s`
    \providecommand{\tightlist}{%
      \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
    \DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
    % Add ',fontsize=\small' for more characters per line
    \newenvironment{Shaded}{}{}
    \newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{\textbf{{#1}}}}
    \newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.56,0.13,0.00}{{#1}}}
    \newcommand{\DecValTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
    \newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
    \newcommand{\FloatTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
    \newcommand{\CharTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
    \newcommand{\StringTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
    \newcommand{\CommentTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textit{{#1}}}}
    \newcommand{\OtherTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{{#1}}}
    \newcommand{\AlertTok}[1]{\textcolor[rgb]{1.00,0.00,0.00}{\textbf{{#1}}}}
    \newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.02,0.16,0.49}{{#1}}}
    \newcommand{\RegionMarkerTok}[1]{{#1}}
    \newcommand{\ErrorTok}[1]{\textcolor[rgb]{1.00,0.00,0.00}{\textbf{{#1}}}}
    \newcommand{\NormalTok}[1]{{#1}}

    % Additional commands for more recent versions of Pandoc
    \newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.53,0.00,0.00}{{#1}}}
    \newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
    \newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
    \newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.73,0.40,0.53}{{#1}}}
    \newcommand{\ImportTok}[1]{{#1}}
    \newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.73,0.13,0.13}{\textit{{#1}}}}
    \newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
    \newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
    \newcommand{\VariableTok}[1]{\textcolor[rgb]{0.10,0.09,0.49}{{#1}}}
    \newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{\textbf{{#1}}}}
    \newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.40,0.40,0.40}{{#1}}}
    \newcommand{\BuiltInTok}[1]{{#1}}
    \newcommand{\ExtensionTok}[1]{{#1}}
    \newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.74,0.48,0.00}{{#1}}}
    \newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.49,0.56,0.16}{{#1}}}
    \newcommand{\InformationTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
    \newcommand{\WarningTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
    \makeatletter
    \newsavebox\pandoc@box
    \newcommand*\pandocbounded[1]{%
      \sbox\pandoc@box{#1}%
      % scaling factors for width and height
      \Gscale@div\@tempa\textheight{\dimexpr\ht\pandoc@box+\dp\pandoc@box\relax}%
      \Gscale@div\@tempb\linewidth{\wd\pandoc@box}%
      % select the smaller of both
      \ifdim\@tempb\p@<\@tempa\p@
        \let\@tempa\@tempb
      \fi
      % scaling accordingly (\@tempa < 1)
      \ifdim\@tempa\p@<\p@
        \scalebox{\@tempa}{\usebox\pandoc@box}%
      % scaling not needed, use as it is
      \else
        \usebox{\pandoc@box}%
      \fi
    }
    \makeatother

    % Define a nice break command that doesn't care if a line doesn't already
    % exist.
    \def\br{\hspace*{\fill} \\* }
    % Math Jax compatibility definitions
    \def\gt{>}
    \def\lt{<}
    \let\Oldtex\TeX
    \let\Oldlatex\LaTeX
    \renewcommand{\TeX}{\textrm{\Oldtex}}
    \renewcommand{\LaTeX}{\textrm{\Oldlatex}}
    % Document parameters
    % Document title
    ((* block title -*))
    ((*- set nb_title = nb.metadata.get('title', '') or resources['metadata']['name'] -*))
    \title{((( nb_title | escape_latex )))}
    ((*- endblock title *))
    ((* block date *))
    ((* if 'date' in nb.metadata *))
    \date{((( nb.metadata.date | escape_latex )))}
    ((* endif *))
    ((* endblock date *))
    ((* block author *))
    ((* if 'authors' in nb.metadata *))
    \author{((( nb.metadata.authors | join(', ', attribute='name') )))}
    ((* endif *))
    ((* endblock author *))
    ((* endblock definitions *))

    ((* block commands *))
    % Prevent overflowing lines due to hard-to-break entities
    \sloppy
    % Setup hyperref package
    \hypersetup{
      breaklinks=true,  % so long urls are correctly broken across lines
      colorlinks=true,
      urlcolor=urlcolor,
      linkcolor=linkcolor,
      citecolor=citecolor,
      }
    % Slightly bigger margins than the latex defaults
    ((* block margins *))
    \geometry{verbose,tmargin=1in,bmargin=1in,lmargin=1in,rmargin=1in}
    ((* endblock margins *))
    ((* endblock commands *))
((* endblock header *))

((* block body *))
\begin{document}
    ((* block predoc *))
    ((* block maketitle *))\maketitle((* endblock maketitle *))
    ((* block abstract *))((* endblock abstract *))
    ((* endblock predoc *))

    ((( super() )))

    % Add a bibliography block to the postdoc
    ((* block postdoc *))
    ((* block bibliography *))((* endblock bibliography *))
    ((* endblock postdoc *))
\end{document}
((* endblock body *))
